| No | Nama Kecamatan | Jumlah Satuan Pendidikan | Residu NPSN | Residu Nomor SK | Residu Lampiran Izin Operasional / Pendirian | Residu Titik Koordinat | Naungan Yayasan |
|---|---|---|---|---|---|---|---|
| 1 | Yapen Timur | 26 | 0 | 5 | 1 | 4 | 10 |
| 2 | Angkaisera | 27 | 0 | 3 | 0 | 7 | 6 |
| 3 | Yapen Selatan | 96 | 0 | 1 | 1 | 14 | 16 |
| 4 | Yapen Barat | 23 | 0 | 0 | 0 | 2 | 1 |
| 5 | Poom | 10 | 0 | 0 | 0 | 1 | 1 |
| 6 | Kosiwo | 22 | 0 | 0 | 0 | 7 | 7 |
| 7 | Yapen Utara | 11 | 0 | 1 | 0 | 1 | 0 |
| 8 | Raimbawi | 9 | 0 | 2 | 0 | 0 | 0 |
| 9 | Teluk Ampimoi | 11 | 0 | 1 | 0 | 2 | 1 |
| 10 | Kepulauan Ambai | 12 | 0 | 3 | 0 | 1 | 1 |
| 11 | Wonawa | 12 | 0 | 0 | 0 | 1 | 1 |
| 12 | Windesi | 11 | 0 | 2 | 0 | 1 | 1 |
| 13 | Pulau Kurudu | 2 | 0 | 2 | 0 | 2 | 2 |
| 14 | Anotaurei | 3 | 0 | 0 | 0 | 0 | 0 |
| 15 | Yawakukat | 2 | 0 | 0 | 0 | 0 | 1 |