| No | Nama Kecamatan | SD (Sederajat) | SMP (Sederajat) | Total |
|---|---|---|---|---|
| 1 | Yapen Timur | 9 | 4 | 13 |
| 2 | Angkaisera | 12 | 3 | 15 |
| 3 | Yapen Selatan | 28 | 11 | 39 |
| 4 | Yapen Barat | 13 | 6 | 19 |
| 5 | Poom | 7 | 1 | 8 |
| 6 | Kosiwo | 10 | 2 | 12 |
| 7 | Yapen Utara | 6 | 3 | 9 |
| 8 | Raimbawi | 8 | 1 | 9 |
| 9 | Teluk Ampimoi | 6 | 3 | 9 |
| 10 | Kepulauan Ambai | 9 | 2 | 11 |
| 11 | Wonawa | 9 | 2 | 11 |
| 12 | Windesi | 8 | 2 | 10 |
| 13 | Pulau Kurudu | 0 | 0 | 0 |